PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g073170.1
Common NameMTR_1g073170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 258aa    MW: 30223.9 Da    PI: 7.9428
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g073170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll+++vk++G g+W++++r  g++R +k+c++rw +yl
  Medtr1g073170.1 22 KGPWTSEEDKLLIEYVKLHGEGRWNSVSRLAGLRRNGKSCRLRWVNYL 69
                     79********************************************97 PP
2Myb_DNA-binding51.62.1e-1675119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Medtr1g073170.1  75 KGQITQQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                      5778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0351773IPR017930Myb domain
SuperFamilySSF466896.5E-3019116IPR009057Homeodomain-like
SMARTSM007174.1E-162171IPR001005SANT/Myb domain
PfamPF002491.3E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-232376IPR009057Homeodomain-like
CDDcd001673.99E-112469No hitNo description
PROSITE profilePS5129418.84174124IPR017930Myb domain
SMARTSM007171.0E-1474122IPR001005SANT/Myb domain
PfamPF002494.1E-1475119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2477123IPR009057Homeodomain-like
CDDcd001679.94E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYSGMMEGNT GWSVIEEDRW RKGPWTSEED KLLIEYVKLH GEGRWNSVSR LAGLRRNGKS  60
CRLRWVNYLR PDLKKGQITQ QEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKNKNPTDA AEKAKNRYFK RQQQQQLKKQ QQQVQMQQQQ LQYNMDMKGI IDLLLEENDY  180
CTSVPSTSQE TQEMVSMYAD TQEQQGCFYS MLNDNNGNVY AHESSNEEIL WDGLWNLDDA  240
LGNSMQLMLQ AKPANVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-282212327127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g073170.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1448070.0AC144807.23 Medicago truncatula clone mth2-9j13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590731.10.0transcription repressor MYB6
TrEMBLG7I2P40.0G7I2P4_MEDTR; Myb transcription factor
STRINGAES609820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-78myb domain protein 305
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]