PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g074260.1
Common NameMTR_1g074260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 112aa    MW: 12564.9 Da    PI: 5.5889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g074260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2262.4e-084372655
              AP2 26 g...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                     g   ++ +r +lg f t eeAa+a+++a+ ++ g
  Medtr1g074260.1  4 GghvRNgRRLWLGCFHTSEEAARAYDRAAYNMSG 37
                     4475457***********************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.406145IPR001471AP2/ERF domain
SMARTSM003808.5E-10351IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-11846IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-16947IPR001471AP2/ERF domain
PfamPF008474.8E-5937IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MNNGGHVRNG RRLWLGCFHT SEEAARAYDR AAYNMSGSSA ILNFPNEYNI SAGAGATSYS  60
NVFEFEYLDL DSLLEVVIDH AKKKNRDPEN PIYQLVINII FNATYVTYYT N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1888635127Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g074260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630809.16e-25ethylene-responsive transcription factor 14
SwissprotQ9LTC55e-19ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A072VMR18e-77A0A072VMR1_MEDTR; AP2 domain class transcription factor
STRINGBra027493.1-P8e-21(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-13Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]