PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g076150.1
Common NameMTR_1g076150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 259aa    MW: 29415.1 Da    PI: 5.1225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g076150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEde+l  +++++G g+W++ ++  g+ R++k+c++rw +yl
  Medtr1g076150.1 14 RGPWSLEEDEILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding54.23.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Medtr1g076150.1  67 RGNFTNEEEENIIKLHEMLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.785961IPR017930Myb domain
SuperFamilySSF466895.86E-3110108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002491.6E-151461IPR001005SANT/Myb domain
CDDcd001677.96E-101661No hitNo description
PROSITE profilePS5129426.83262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-2765117IPR009057Homeodomain-like
SMARTSM007173.3E-1566114IPR001005SANT/Myb domain
PfamPF002499.1E-1667112IPR001005SANT/Myb domain
CDDcd001672.19E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVRAPCCEKM GLKRGPWSLE EDEILTSYIQ KHGHGNWRAL PKLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TNEEEENIIK LHEMLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKKLNQTN  120
SEAKKKAISK PKIKRSDSNS STITQSESAS ACTTSSSDFS SVTVGERKDI KSEDIESMEE  180
TMAVIDESFW SEAAALDETS TDMKSSSLTI SNEMLPLQYP DEILPESHED YNSNMDDGMD  240
FWYDIFIRTG DQIELPEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26121175109B-MYB
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.158640.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g076150.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0522660.0BT052266.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-B-23 unknown mRNA.
GenBankBT1401780.0BT140178.1 Medicago truncatula clone JCVI-FLMt-6O6 unknown mRNA.
GenBankEF4684840.0EF468484.1 Medicago truncatula MYB transcription factor MYB50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468731.10.0transcription factor MYB13
SwissprotQ9SJX87e-81MYB14_ARATH; Transcription factor MYB14
TrEMBLI3SI810.0I3SI81_MEDTR; Myb-related transcription factor LBM1
STRINGXP_004495379.11e-152(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-78myb domain protein 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]