PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g076150.2
Common NameMTR_1g076150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 207aa    MW: 23205.9 Da    PI: 4.4688
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g076150.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-0836602348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++Ia++++ gRt++++k+ w+++l
  Medtr1g076150.2 36 RWSAIAAKLP-GRTDNEIKNVWHTHL 60
                     7*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4931160IPR017877Myb-like domain
PfamPF002492.6E-63160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-133572IPR009057Homeodomain-like
SuperFamilySSF466892.77E-83568IPR009057Homeodomain-like
CDDcd001677.96E-53660No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MCHDIVNSLC DDCKIIINII RVNNPKQITN SILISRWSAI AAKLPGRTDN EIKNVWHTHL  60
KKKLNQTNSE AKKKAISKPK IKRSDSNSST ITQSESASAC TTSSSDFSSV TVGERKDIKS  120
EDIESMEETM AVIDESFWSE AAALDETSTD MKSSSLTISN EMLPLQYPDE ILPESHEDYN  180
SNMDDGMDFW YDIFIRTGDQ IELPEF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.158640.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g076150.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684840.0EF468484.1 Medicago truncatula MYB transcription factor MYB50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468731.11e-112transcription factor MYB13
TrEMBLA0A072VLQ81e-148A0A072VLQ8_MEDTR; Myb-related transcription factor LBM1
STRINGXP_004495379.11e-81(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-19myb domain protein 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]