PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g077700.1
Common NameMTR_1g077700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 187aa    MW: 20119.3 Da    PI: 7.9025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g077700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000116081122
                     EEETTTTEEESSHHHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                     y C+ C+k+F+++  L  H + 
  Medtr1g077700.1 60 YACKTCNKTFTSSQALGGHRKG 81
                     89************99988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-85980IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-85982No hitNo description
SMARTSM00355336080IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.646088IPR007087Zinc finger, C2H2
SuperFamilySSF576674.92E-8118145No hitNo description
PfamPF139122.7E-8122147IPR007087Zinc finger, C2H2
SMARTSM003551.2123146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473123150IPR007087Zinc finger, C2H2
PROSITE patternPS000280125146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEASHEQQLS LGYREHINIT EGNITQKVIN PSQSPNPSST SAYSSTREGE TRESARYNVY  60
ACKTCNKTFT SSQALGGHRK GCQKKPRDGF KINNKSISLK LNSINGMGNI YASSSSSNKS  120
KVYGCSICGS KFTSGQALGG HMTFHHAPVE ETSSTPMASE PDEEDEEPPA KKMNVPLDLD  180
LNLPAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g077700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468856.11e-137zinc finger protein ZAT5
TrEMBLA0A072VND01e-136A0A072VND0_MEDTR; C2H2 and C2HC zinc finger protein
STRINGXP_007144239.16e-29(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-20C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]