PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g077730.1
Common NameMTR_1g077730
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 195aa    MW: 21294.6 Da    PI: 9.1633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g077730.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000324466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C+k+F++   L  H ++H
  Medtr1g077730.1 44 YACKTCKKTFTSFQALGGHRKVH 66
                     89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-104368IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-94366No hitNo description
PROSITE profilePS5015711.3024471IPR007087Zinc finger, C2H2
SMARTSM003550.0444466IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.0E-44467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-9126153No hitNo description
PfamPF139122.9E-8130155IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473131158IPR007087Zinc finger, C2H2
SMARTSM003551.2131154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEASHEQQLS LGSREQQSPI PFSINIAYSS TEGGTRESAR YNVYACKTCK KTFTSFQALG  60
GHRKVHKKPR YDRQVQEFQF KTNNKSISLK LNSINGMGNI YASSSSSSNN TSTTTTTNNN  120
SNTNNNKTKV YGCSICGSKF TSGQALGGHM TFHHAPVETT SSTPMALQPD EEDEEPPRKK  180
MNVSLDLDLN LPAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g077730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1398529e-33AC139852.18 Medicago truncatula clone mth2-8n13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468858.11e-144zinc finger protein ZAT5
TrEMBLA0A072VXX01e-142A0A072VXX0_MEDTR; C2H2-type zinc finger protein
STRINGXP_007144239.14e-37(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-23C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]