PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g077760.1
Common NameMTR_1g077760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 135aa    MW: 15761.8 Da    PI: 8.4263
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g077760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.85.9e-10113134122
                      ---SS-EEEEEEE--TT-SS-E CS
             WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                      ldDgynWrKYGq++ +g+++pr
  Medtr1g077760.1 113 LDDGYNWRKYGQRVARGNPNPR 134
                      59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF032262.0E-7355IPR004910Yippee/Mis18/Cereblon
Gene3DG3DSA:2.20.25.804.0E-1098134IPR003657WRKY domain
SuperFamilySSF1182901.15E-8105134IPR003657WRKY domain
PROSITE profilePS5081114.297108134IPR003657WRKY domain
PfamPF031061.0E-5114134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MNVKVGQKED RQLMTGLYTV ADVYCCECNE VLGFKYERAY EETQKYKERK YFIEEQFNGG  60
GLTVQNNFAH TINQTFRIVT NIEIVVLYRI ASSYRSSREP RNIIITTIEI DVLDDGYNWR  120
KYGQRVARGN PNPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g077760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VND41e-94A0A072VND4_MEDTR; Protein yippee-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-17WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]