PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g078260.1
Common NameMTR_1g078260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 485aa    MW: 53856.8 Da    PI: 5.0146
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g078260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72e-27246304158
                      ---SS-EEEEEEE--TT-S.S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      ldDgy+WrKYG Ke+kg++ +pr+YY+C++++C+ kk+ver+a+dpk+v +tY g+H+h
  Medtr1g078260.1 246 LDDGYCWRKYGCKEIKGNPnNPRGYYKCSTHNCNIKKQVERDAKDPKYVLVTYDGKHTH 304
                      59***************9736************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-28233305IPR003657WRKY domain
SuperFamilySSF1182909.42E-23240305IPR003657WRKY domain
PROSITE profilePS5081126.991241304IPR003657WRKY domain
SMARTSM007744.4E-29246306IPR003657WRKY domain
PfamPF031063.9E-21247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MSNTMENNNT NTNTNTNTNT NYTNNNNNNE NQVLNIEVDC SAKQKKRRDL IDLNESPPSP  60
DYSEVFIYSL YSDTCKDDDQ DHDSADDCHV ATRGDVRLQA ETEVQQPALN FSSPTPPDQR  120
HGAEEEQDHV QNDANVVVKN AEILRARKGK MPMNFSEAVH AKEDSITDDK ETNVPTDGQV  180
SDTPADDEAT AIGGMMLLQY DDGGASGSCP QRKRKRDFSE CYKTPCPMTD AGQKIVIRVE  240
SDEDILDDGY CWRKYGCKEI KGNPNNPRGY YKCSTHNCNI KKQVERDAKD PKYVLVTYDG  300
KHTHGPVIDK KSRPTYSRNT NAAGVRRNAS MPPPPSPPSA LPMVHPLPPF HQYGYIPYGM  360
NYGWPNTMMW PLLNMSGNTM MQPFLNMTGN TMMQPYRPIS EQNFLERRVS TPTPIGTNQV  420
GPNINRAVPL PVFPISPSLP PFHIVPYGGD FLQVGGNGIV AAPVFPFMGT SPADQEATNV  480
PDTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20237304874Probable WRKY transcription factor 4
2lex_A1e-20237304874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g078260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630822.10.0probable WRKY transcription factor 2
TrEMBLA0A072VMA80.0A0A072VMA8_MEDTR; WRKY family transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2121434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.14e-25WRKY DNA-binding protein 56
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]