PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g081570.1
Common NameMTR_1g081570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GeBP
Protein Properties Length: 100aa    MW: 11302.9 Da    PI: 9.0741
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g081570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57339.41.7e-122899995
           DUF573  9 eeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95
                     +eDei++LqG++d++ ++g+s+++di  fy+++               K rrLKk   +  +k + gk+++f+++h+q +fe+s+ki
  Medtr1g081570.1 28 NEDEITILQGFLDYNVNRGSSYHNDIGSFYDQI---------------KFRRLKKNHCMVLHKFDFGKDFAFKRAHYQATFEISHKI 99
                     69*****************************98...............68**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.1E-82899IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSTFATTAAI PTTIILALPN TAATANVNED EITILQGFLD YNVNRGSSYH NDIGSFYDQI  60
KFRRLKKNHC MVLHKFDFGK DFAFKRAHYQ ATFEISHKI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g081570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591032.26e-30probable transcription factor At3g04930
SwissprotF4K5T43e-14STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLG7I7E61e-67G7I7E6_MEDTR; DUF573 family protein
STRINGAES612822e-68(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-16DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]