PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g083040.2
Common NameMTR_1g083040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 1123aa    MW: 126287 Da    PI: 9.6718
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g083040.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-094682341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W++ E e++++a +++G++ Wk++a+ +  +R+ +++ 
  Medtr1g083040.2 46 QWSKGELERFYEAYRKHGKD-WKKVAAAVR-NRSIEMVE 82
                     6*****************99.*********.***98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.1264295IPR017884SANT domain
SuperFamilySSF466896.68E-104290IPR009057Homeodomain-like
SMARTSM007170.00154391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-44582IPR009057Homeodomain-like
PfamPF002497.3E-84686IPR001005SANT/Myb domain
CDDcd001671.39E-44788No hitNo description
SMARTSM011358.5E-56618719IPR033471DIRP domain
PfamPF065841.8E-32618718IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MAPTRKSRSV NKRFKNSNDI SPEKDGVGSS KNKQRKKKLS DKLGSQWSKG ELERFYEAYR  60
KHGKDWKKVA AAVRNRSIEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS  120
ERESNDAPGS RKPVKRKREK LQLNVSKDPV QSQSVTSSDG CLSLLKKRRI DGLQPRAVGK  180
RTPRVPVYHS QKKDDRENYV SPNKRSLKST VDGNDDEVEH VAFALSRASQ RGGSPLVSQT  240
PRRRGEQKFS PAQSRDRMRQ MSETARAKFH NASVDGEFLE GSLESRGAEN GEYVRDTSSL  300
MDMEGTSTAG VPKGGKFYRK KERVENVGNY QLDDGGEACS GTEEGLSFNS LKENNMEVTN  360
EKLEQFSPTS QRKRNKKLLF GGNSVNRDVF GDEIHALDAL QTLADLSLMM PSSEVESESC  420
VQLKGERMMV DKDDKSALPE STSTSHKRNK VKIRAVPGPD TSTFKKSKLK DIANDTNALS  480
ESKDQLPFAD KTWKRKPKST VSKAVDDEKK TVIKGKFTDQ VFASPKQIKT VKPSEVLLRA  540
DQKGFAVSTS EIPLLSEVSS PTKKSRRKMI FQRPSMRKEK SYENVLKSQP NKHSTQKEKL  600
SSCLSSYLVR RWFTSEWFYS ALDYPWFAKR EFVEYLNHVG LGNIPRLTRV EWSVIKSSLG  660
KPRRFSEHFL HEERQKLEQY RESVRKHYSE LRNGIRDGLP TDLARPLYVG QRVIAIHPKT  720
REIHDGSVLT VDHDKCRIQF DRPQLGVEFI TDIDCMPLNP LDNMPEALRR QIGARKASFT  780
TIEPHINGNS SFGGCEMHAS PVKVDANHVT SQANIGNLCA QAASAQPCKV MQHQSKEADI  840
HALSELKRAL DKKDTLLAEL RNANNGILEN QNGIECLKDS EGFKKHYATV LVELKEASGQ  900
VSDTMLQLRQ RNTYTETSLP PWMKPKANFE GHDDLPNMLD SSMTQESRST VIEIIKGSRL  960
QAHAMLDAAF QAWSQATKEG KDAITKIGQA LDSIDYQQLS SKYRSPVIRS QDQVNGSYYH  1020
ANQSTCRASE PLLNDASGLK LHKDSDEVEI EIPFELITSC VATLTMIQSC TERQYPPADV  1080
AQILDSAVTS LQPCDTRNLP IYREIQMCMG RIKTQILALI PT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.242320.0flower| leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g083040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1514260.0AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469040.10.0protein ALWAYS EARLY 3 isoform X4
TrEMBLA0A072VML30.0A0A072VML3_MEDTR; Always EARLY-like protein
STRINGAES613720.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]