PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g083040.7

Common Name

MTR_1g083040

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

MYB_related

Protein Properties

Length: 827aa MW: 93501.9 Da PI: 10.358

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g083040.7	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.3	4.2e-09	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E e++++a +++G++ Wk++a+ + +R+ +++ Medtr1g083040.7 46 QWSKGELERFYEAYRKHGKD-WKKVAAAVR-NRSIEMVE 82 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.126	42	95	IPR017884	SANT domain
SuperFamily	SSF46689	4.59E-10	42	90	IPR009057	Homeodomain-like
SMART	SM00717	0.0015	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-4	45	82	IPR009057	Homeodomain-like
Pfam	PF00249	5.1E-8	46	86	IPR001005	SANT/Myb domain
CDD	cd00167	1.56E-4	47	81	No hit	No description
SMART	SM01135	8.5E-56	618	719	IPR033471	DIRP domain
Pfam	PF06584	1.2E-32	618	718	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MAPTRKSRSV NKRFKNSNDI SPEKDGVGSS KNKQRKKKLS DKLGSQWSKG ELERFYEAYR 60 KHGKDWKKVA AAVRNRSIEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS 120 ERESNDAPGS RKPVKRKREK LQLNVSKDPV QSQSVTSSDG CLSLLKKRRI DGLQPRAVGK 180 RTPRVPVYHS QKKDDRENYV SPNKRSLKST VDGNDDEVEH VAFALSRASQ RGGSPLVSQT 240 PRRRGEQKFS PAQSRDRMRQ MSETARAKFH NASVDGEFLE GSLESRGAEN GEYVRDTSSL 300 MDMEGTSTAG VPKGGKFYRK KERVENVGNY QLDDGGEACS GTEEGLSFNS LKENNMEVTN 360 EKLEQFSPTS QRKRNKKLLF GGNSVNRDVF GDEIHALDAL QTLADLSLMM PSSEVESESC 420 VQLKGERMMV DKDDKSALPE STSTSHKRNK VKIRAVPGPD TSTFKKSKLK DIANDTNALS 480 ESKDQLPFAD KTWKRKPKST VSKAVDDEKK TVIKGKFTDQ VFASPKQIKT VKPSEVLLRA 540 DQKGFAVSTS EIPLLSEVSS PTKKSRRKMI FQRPSMRKEK SYENVLKSQP NKHSTQKEKL 600 SSCLSSYLVR RWFTSEWFYS ALDYPWFAKR EFVEYLNHVG LGNIPRLTRV EWSVIKSSLG 660 KPRRFSEHFL HEERQKLEQY RESVRKHYSE LRNGIRDGLP TDLARPLYVG QRVIAIHPKT 720 REIHDGSVLT VDHDKCRIQF DRPQLGVEFI TDIDCMPLNP LDNMPEALRR QIGARKASFT 780 TIEPHINGNS SFGGCEMHAS PVKVRPSSSA LVKQGKVRFL TSIKMF*

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MAPTRKSRSV NKRFKNSNDI SPEKDGVGSS KNKQRKKKLS DKLGSQWSKG ELERFYEAYR  60
KHGKDWKKVA AAVRNRSIEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS  120
ERESNDAPGS RKPVKRKREK LQLNVSKDPV QSQSVTSSDG CLSLLKKRRI DGLQPRAVGK  180
RTPRVPVYHS QKKDDRENYV SPNKRSLKST VDGNDDEVEH VAFALSRASQ RGGSPLVSQT  240
PRRRGEQKFS PAQSRDRMRQ MSETARAKFH NASVDGEFLE GSLESRGAEN GEYVRDTSSL  300
MDMEGTSTAG VPKGGKFYRK KERVENVGNY QLDDGGEACS GTEEGLSFNS LKENNMEVTN  360
EKLEQFSPTS QRKRNKKLLF GGNSVNRDVF GDEIHALDAL QTLADLSLMM PSSEVESESC  420
VQLKGERMMV DKDDKSALPE STSTSHKRNK VKIRAVPGPD TSTFKKSKLK DIANDTNALS  480
ESKDQLPFAD KTWKRKPKST VSKAVDDEKK TVIKGKFTDQ VFASPKQIKT VKPSEVLLRA  540
DQKGFAVSTS EIPLLSEVSS PTKKSRRKMI FQRPSMRKEK SYENVLKSQP NKHSTQKEKL  600
SSCLSSYLVR RWFTSEWFYS ALDYPWFAKR EFVEYLNHVG LGNIPRLTRV EWSVIKSSLG  660
KPRRFSEHFL HEERQKLEQY RESVRKHYSE LRNGIRDGLP TDLARPLYVG QRVIAIHPKT  720
REIHDGSVLT VDHDKCRIQF DRPQLGVEFI TDIDCMPLNP LDNMPEALRR QIGARKASFT  780
TIEPHINGNS SFGGCEMHAS PVKVRPSSSA LVKQGKVRFL TSIKMF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.24232	0.0	flower\| leaf\| pod\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g083040.7

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151426	0.0	AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013469041.1	0.0	protein ALWAYS EARLY 2 isoform X3
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A072VYD1	0.0	A0A072VYD1_MEDTR; Always EARLY-like protein
STRING	AES61372	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Medtr1g083040.7
Entrez Gene	11426420

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]