PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g085590.1
Common NameMTR_1g085590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 296aa    MW: 33352.6 Da    PI: 5.196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g085590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-057393121
                     EEETTTTEEESSHHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                     ++C  C+k+F+++  L+ H+r
  Medtr1g085590.1 73 HSCDVCNKVFTSNKALNGHMR 93
                     79******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-66998No hitNo description
Gene3DG3DSA:3.30.160.602.7E-57197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.82473100IPR007087Zinc finger, C2H2
SMARTSM003556.8E-47395IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-97397IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYSSSSPSHD HSFHQKPKTN NQSLQKTRYP SFSFVESSTT NDAGKENPEK KIIWRFSYSV  60
AHNHNDVVKQ KKHSCDVCNK VFTSNKALNG HMRCHCRQNG PTVAAPSFEK QQPCRRRRYM  120
NIDDDDDDVI ETVAEILLQL SRMGYEDVNH RGAKRKNLSC NMMDDNEKKK RKKKEQGVLL  180
TSGGHDIEEK KTINEGETEL GSKVVKNVDL NELSSDDNEG ETELGSKVVK NVDLNELPSD  240
DNEGEAELGS KDVKNFDLNE LPSDDNEGET ESGSKVVKNL DLNELPSDEF EDKTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153173KRKNLSCNMMDDNEKKKRKKK
2167173KKKRKKK
3168172KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g085590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VNE80.0A0A072VNE8_MEDTR; C2H2 type zf-met: zinc-finger protein
STRINGAES772281e-52(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]