PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g086790.1
Common NameMTR_1g086790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 326aa    MW: 36278.3 Da    PI: 7.2029
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g086790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.75.6e-34158215259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h+
  Medtr1g086790.1 158 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSYTDPSIVVTTYEGQHTHP 215
                      8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.1E-1311325IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.809.0E-35142217IPR003657WRKY domain
SuperFamilySSF1182901.57E-29149217IPR003657WRKY domain
PROSITE profilePS5081131.95152217IPR003657WRKY domain
SMARTSM007741.4E-39157216IPR003657WRKY domain
PfamPF031061.3E-26158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEKKDMGLSV KSEDVVDSSS SLLNNGYQFS SVFDFCEVER SSSLGFMELL GGHDYSPLLD  60
VPQLSTMSTV KASSDTTGKE CSEVLNQQQP ATPNSCSISS ASSEAVNDNK TLVDQAEEDE  120
EEEKQKTNKQ LKTKKTNLKR QREPRFAFMT KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY  180
YRCTTASCNV KKRVERSYTD PSIVVTTYEG QHTHPSPTMS RSAFAGVQIP QPAGVVSGGF  240
STTNFGSVLQ GNYLSQYHQQ PYQHQQLLVN TLSSLSHPYN NSSSFKNSPF TTQERVQLCN  300
PGTTAFLRDN GLLQDVVPSH MLKEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-29147217777Probable WRKY transcription factor 4
2lex_A9e-29147217777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.142030.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g086790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1485500.0BT148550.1 Medicago truncatula clone JCVI-FLMt-13B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591381.10.0probable WRKY transcription factor 23
SwissprotO229006e-66WRK23_ARATH; WRKY transcription factor 23
TrEMBLG7ICW10.0G7ICW1_MEDTR; WRKY transcription factor
STRINGAES616320.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-56WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]