PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g087040.1
Common NameMTR_1g087040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 151aa    MW: 16992.2 Da    PI: 6.0059
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g087040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.93e-152784562
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                     ++ +r+ +NRe+ArrsR+RK++++e L+ ++ +L+ eN++L+  ++  ++ + k+++ 
  Medtr1g087040.1 27 RKRKRMLSNRESARRSRLRKQQQVEDLTGEAGKLKIENDRLARSIKATEEAYLKMEAA 84
                     57899***********************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.9E-142387IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.6E-112381No hitNo description
PROSITE profilePS5021710.3922576IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.19E-112781No hitNo description
PfamPF001704.4E-122784IPR004827Basic-leucine zipper domain
CDDcd147027.06E-162878No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MASIQRPVSS CSASGGSDGM DLQIDERKRK RMLSNRESAR RSRLRKQQQV EDLTGEAGKL  60
KIENDRLARS IKATEEAYLK MEAANDVIRA QTRELEAQFR FLNSVIDAAA AEEANSFSVD  120
DVPLIDDPLL KPWFIPYPNY SMASHEMMLR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945RRSRLRK
23946RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.119810.0flower| leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g087040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1519560.0AC151956.5 Medicago truncatula clone mth2-52p17, complete sequence.
GenBankBT1458900.0BT145890.1 Medicago truncatula clone JCVI-FLMt-9N19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591402.11e-107bZIP transcription factor 53
TrEMBLG7IDQ21e-105G7IDQ2_MEDTR; BZIP transcription factor
STRINGAES616531e-106(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42023460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.13e-25basic leucine-zipper 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]