PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g087190.1
Common NameMTR_0036s0150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 55aa    MW: 6453.56 Da    PI: 6.4957
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g087190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.11.3e-17652248
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                     +pGfrFhPtdee+v++yLk+k++gk  +++++++ +diyk+ePwdLp
  Medtr1g087190.1  6 APGFRFHPTDEEIVCFYLKRKLTGKLPPCFDHLAFIDIYKFEPWDLP 52
                     69********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-17454IPR003441NAC domain
PROSITE profilePS5100519.668554IPR003441NAC domain
PfamPF023654.4E-9747IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
MSLYQAPGFR FHPTDEEIVC FYLKRKLTGK LPPCFDHLAF IDIYKFEPWD LPSM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.135122e-66root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g087190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1529215e-87AC152921.8 Medicago truncatula clone mth2-102h2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443146.11e-33NAC domain-containing protein 53
SwissprotQ9FIW53e-16NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A072TIW73e-32A0A072TIW7_MEDTR; NAC transcription factor-like protein
TrEMBLG7IDR61e-32G7IDR6_MEDTR; NAC transcription factor-like protein
STRINGAES616673e-32(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114331739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-18NAC domain containing protein 94
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]