PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g087540.1
Common NameMTR_1g087540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 282aa    MW: 32262.6 Da    PI: 4.2705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g087540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-072222748
                     HHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 27 IartmgkgRtlkqcksrwqkyl 48
                     Ia++++ gRt++++k++w+++l
  Medtr1g087540.1  2 IASHLP-GRTDNEIKNHWNSHL 22
                     9*****.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.663126IPR017930Myb domain
CDDcd001675.67E-4222No hitNo description
SuperFamilySSF466891.71E-5227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-9222IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MIASHLPGRT DNEIKNHWNS HLSRKIYSFS KISTTIEPKI MDIVRPPKRK CGKTSRWAMK  60
KNKSYKKQTI INTKENYIEP EVQIPRTPSL DCEVTEKIID DVEVKTTHDE KETTYELCDD  120
ILGLSELLDD INEDSGAMCI STHVKTMENC LLETSGSVSN LSQEREMMGD GGEENERTTN  180
DDGDCLKYNL VSCEDPESSV NQTSNNGESG EWSLNMGLDL DDKWNWESVM EFSFDDDNSN  240
REHKENLLNW LCEDDDWEGD SKRLGEIDSQ KQNDLIAWFL S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.233730.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g087540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684910.0EF468491.1 Medicago truncatula MYB transcription factor MYB112 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591445.30.0transcription factor MYB11
TrEMBLG7IDU50.0G7IDU5_MEDTR; Myb transcription factor, putative
STRINGAES616960.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-15myb domain protein 12
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]