PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g088875.3
Common NameMTR_1g088875
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 345aa    MW: 36913.8 Da    PI: 9.0461
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g088875.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-115276327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      ++C +++rtG+C yG+rC+F+H++
  Medtr1g088875.3 52 VPNCAYYMRTGFCGYGGRCRFNHPR 76
                     689********************96 PP
2zf-CCCH42.41.2e-1396121227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tGtCk+G++CkF+H++
  Medtr1g088875.3  96 GEPPCQYYLKTGTCKFGASCKFHHPK 121
                      579*********************96 PP
3zf-CCCH38.71.6e-12142167227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+G +CkF+H++
  Medtr1g088875.3 142 GESECSYYLKTGQCKFGVTCKFHHPQ 167
                      7899********************97 PP
4zf-CCCH37.53.8e-12299325127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C++++rtG Ck+G  C+++H++
  Medtr1g088875.3 299 PGEPVCQYYMRTGDCKFGLACRYHHPR 325
                      5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.1644977IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-44976IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-65278IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-95276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-55576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.05194122IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-794121IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-1196121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-697122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-599120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295140168IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5140167IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4146166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953298326IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6298325IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9300325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6301328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4303326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDLYGRSPTR NGSNPLNQHE WRSPAADLGE SMWHLSLGSG GGVESYPERH GVPNCAYYMR  60
TGFCGYGGRC RFNHPRDRAA VAAAVRATGD YPERLGEPPC QYYLKTGTCK FGASCKFHHP  120
KNGGGYLSQA PLNIYGYPLR PGESECSYYL KTGQCKFGVT CKFHHPQPAG TSLPASAPQF  180
YQQVQSPTVP PLPEQFGGAS ASVRVARPPV LPGSYVQGAY GPVLLSPGVV PFPGWSPYSA  240
PVSPVLSPGA QPAVGATSLY GVTQLSSSTS AFARPYTPLP SSPGPGGSTL QEKVFPERPG  300
EPVCQYYMRT GDCKFGLACR YHHPRDQVAA RPLLSPFGLP LRPV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.164570.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g088875.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0529640.0BT052964.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-D-6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469205.10.0zinc finger CCCH domain-containing protein 32 isoform X2
RefseqXP_013469207.10.0zinc finger CCCH domain-containing protein 32 isoform X3
SwissprotQ84W911e-161C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A072VMK30.0A0A072VMK3_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein
STRINGXP_004495983.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-154C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]