PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090170.2
Common NameMTR_1g090170
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 317aa    MW: 35879.2 Da    PI: 7.5406
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090170.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-19152201356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +kGVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  Medtr1g090170.2 152 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEDAAIAYDTAAYILRGE 201
                      8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.99E-30150210No hitNo description
PROSITE profilePS5103221.891151208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-30151209IPR001471AP2/ERF domain
SMARTSM003803.5E-34151214IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-21151208IPR016177DNA-binding domain
PfamPF008472.3E-11152201IPR001471AP2/ERF domain
PRINTSPR003675.2E-10152163IPR001471AP2/ERF domain
PRINTSPR003675.2E-10174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEDTFPKMEI FTQKELPTCF QEIATTESKY LEDTIIRRGS YSLTSSSTSS PQKLFWCTSN  60
STSMKQEEPS MLYSSTSNIK SSEIMSTSSN PTYPMSQFGL TQHHQQSAYE FYDSNKMDRN  120
MITNLQSKSF NENWLSATKT QPMKYGTRGK LFKGVRQRHW GKWVAEIRLP RNRTRVWLGT  180
FETAEDAAIA YDTAAYILRG ECAQLNFPNL KHVIQANSLN GTTASLVEAK LQAISQGVSS  240
SHRKQGDSSA RLNNRHIDEI KNGKDESIKE LKVVGDITER SKSTQNEICD VETVQLSRMP  300
SLDMDIIWNE LLVSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22148208263ATERF1
3gcc_A6e-22148208263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98500.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090170.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1667070.0AC166707.9 Medicago truncatula strain cultivar Jemalong A17 clone mte1-13o17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591645.20.0ethylene-responsive transcription factor ERF062
TrEMBLA0A072VZ080.0A0A072VZ08_MEDTR; AP2 domain class transcription factor
STRINGAES618960.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-49ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]