PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090290.1
Common NameMTR_070s0027, MTR_1g090290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 198aa    MW: 22641.1 Da    PI: 6.7931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17112162255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+      r++lg+f+ + +Aaka++ a+ +++g
  Medtr1g090290.1 112 HYRGVRRRP-WGKYAAEIRDPTRK--GSRVWLGTFDREIDAAKAYDCAAFRMRG 162
                      7********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-31111171IPR001471AP2/ERF domain
PfamPF008471.1E-11112162IPR001471AP2/ERF domain
CDDcd000181.10E-27112170No hitNo description
SuperFamilySSF541714.9E-22112172IPR016177DNA-binding domain
PROSITE profilePS5103223.604112170IPR001471AP2/ERF domain
SMARTSM003802.9E-34112176IPR001471AP2/ERF domain
PRINTSPR003673.6E-13113124IPR001471AP2/ERF domain
PRINTSPR003673.6E-13152172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTTSEETSSL TQLSQHLLED VSDSFFTNLS CVKLENTSSP EIDLDSYFSE HNSFLEILGF  60
EADTKLIDFT SSHNKVQNLH EESPLEETQK TTNLAESMVL ERKEQRSYGT RHYRGVRRRP  120
WGKYAAEIRD PTRKGSRVWL GTFDREIDAA KAYDCAAFRM RGQKAILNFP LEAGEANPKP  180
NNCGRKRRIH QRYDATS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-28111171464ATERF1
3gcc_A4e-28111171464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.192420.0glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1667070.0AC166707.9 Medicago truncatula strain cultivar Jemalong A17 clone mte1-13o17, complete sequence.
GenBankAC2335560.0AC233556.3 Medicago truncatula clone mth2-15m21, complete sequence.
GenBankBT1379530.0BT137953.1 Medicago truncatula clone JCVI-FLMt-11K9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591657.11e-147ethylene-responsive transcription factor ERF106
TrEMBLG7I3031e-146G7I303_MEDTR; Ethylene response factor
STRINGAES619081e-147(Medicago truncatula)
STRINGAES842381e-147(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.14e-40ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]