PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090670.2
Common NameMTR_1g090670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 221aa    MW: 24423.8 Da    PI: 6.3964
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090670.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.72e-111233355
          G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                     +++m+vkgLtl+h+kSHLQkYRl
  Medtr1g090670.2  1 MRTMNVKGLTLYHLKSHLQKYRL 23
                     689*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-10124IPR009057Homeodomain-like
PfamPF143792.2E-1364109IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRTMNVKGLT LYHLKSHLQK YRLGKQAGKD FDEGCKDGSY LLESPGTENS SPKLPASDAN  60
EGHEVKEALR AQMEVQSKLH LLVEAEKHLQ IRQDAERRYM AMLERACKML ADQFIGDTTI  120
DTDIQKFQEL PSTELGGNGM HISEVPYILQ PQGANCSTES CLTSLESLRG LTLEGSPSGT  180
KRMLGLDSMV SPLIWSETNM RTQGIHLAQV NPQGIARYGM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.16690.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090670.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469265.11e-163protein PHR1-LIKE 3
TrEMBLA0A072VN931e-163A0A072VN93_MEDTR; Myb-like transcription factor family protein
STRINGXP_004496120.11e-146(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.12e-34G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]