PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g091013.1

Common Name

MTR_1g091013

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 70aa MW: 8009.25 Da PI: 10.7858

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g091013.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38	5.3e-12	15	61	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fYneY k++GF++r+++ +ksk+++ t+ +fvCskeg+r +k + Medtr1g091013.1 15 DFYNEYIKKIGFDIRRKYGNKSKKDRIPTSIRFVCSKEGNRGVDKLN 61 6**************************************99877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-8	15	61	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MVGKTSISHA KPHHDFYNEY IKKIGFDIRR KYGNKSKKDR IPTSIRFVCS KEGNRGVDKL 60 NSLTKELRA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g091013.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024633610.1	2e-16	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_024634834.1	2e-17	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A072VZC3	3e-43	A0A072VZC3_MEDTR; FAR1 DNA-binding domain protein
STRING	AES68720	9e-15	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15115	2	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-06	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Medtr1g091013.1
Entrez Gene	25484882

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]