PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g093095.1
Common NameMTR_1g093095
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 295aa    MW: 33195.5 Da    PI: 8.3403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g093095.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05115134120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k+F+r  n++ H+
  Medtr1g093095.1 115 FSCTVCNKTFNRFNNMQMHM 134
                      89*****************9 PP
2zf-C2H213.60.0002202224123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +C k+F  + + ++H +++
  Medtr1g093095.1 202 FECRKCRKTFAVRGDWRTHEKNC 224
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-599136No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5115134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201115142IPR007087Zinc finger, C2H2
SMARTSM003550.15115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
PROSITE profilePS508688.151160176IPR003616Post-SET domain
SMARTSM00355210165197IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.09E-5186222No hitNo description
SMARTSM0035553202222IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQTHHQYYSF SCESASCSSS LDDEDSIFLS LAPPGHQIPP KLTPPHPTIS TTIPPLHQIP  60
ISTTTSLHHH HTCAVNVALN ALINPTFTSK PSHTPIIPQY WIPSPAQILV GPTQFSCTVC  120
NKTFNRFNNM QMHMWGHGSQ YRKGPESLKG PKPASSSSML KLPCYCCAEG CRNNINYPRA  180
RPLKDFRTLQ THYKRKHGGK SFECRKCRKT FAVRGDWRTH EKNCGKLWFC ICGSDFKHKR  240
SLKDHVRAFG NGHAPHTLES LSFDGHKVNE NYMEEEESGS EDDDNDSEVV FSLN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g093095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469412.10.0zinc finger protein WIP6
SwissprotQ9FX681e-107ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A072VZH10.0A0A072VZH1_MEDTR; C2H2-type zinc finger protein
STRINGXP_004496311.11e-120(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-102C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]