PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g093600.1
Common NameMTR_1g093600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family RAV
Protein Properties Length: 385aa    MW: 41767 Da    PI: 9.2683
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g093600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.95.9e-1462110155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Medtr1g093600.1  62 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAALRFRG 110
                      89****9888.8*********3.....5**********99*************98 PP
2B389.82.2e-28192298190
                      EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                      f+k+ tpsdv+k++rlv+pk++ae+h                     +++  l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L++g
  Medtr1g093600.1 192 FEKTVTPSDVGKLNRLVIPKQHAEKHfplnavavavacdgvstAAAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAG 285
                      99***************************9999999998777744555899******************************************* PP

                      -EEEEEE-SSSEE CS
               B3  78 DfvvFkldgrsef 90 
                      D v F ++   ++
  Medtr1g093600.1 286 DAVRFFRSTGPDR 298
                      ***9986544555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-2562116No hitNo description
SuperFamilySSF541714.77E-1662116IPR016177DNA-binding domain
PfamPF008471.0E-862110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1963116IPR001471AP2/ERF domain
PROSITE profilePS5103219.90263118IPR001471AP2/ERF domain
SMARTSM003801.8E-2663124IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.4E-39185318IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-28190304IPR015300DNA-binding pseudobarrel domain
CDDcd100176.24E-27191293No hitNo description
PfamPF023621.3E-25192298IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717192308IPR003340B3 DNA binding domain
SMARTSM010195.0E-22192307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MELGGSSTDE TVTSNDSLSA NLSTPPPTLN SLSRVGSAAS SVVDPEIYGV SGEAESRKLP  60
SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDIAALRFRG KDAVTNSKSL  120
TGVGNDADEG ETEFLNSHSK SEIVDMLRKH TYDDELKQSM RDMSGGRQRR NGELNGAVSR  180
GACDAKAREQ LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL NAVAVAVACD GVSTAAAAAK  240
GLLLNFEDVG GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLRAGDAVRF FRSTGPDRQL  300
YIDCKARSIG VVGGQVDNNN NNTGGLFITV RPVVEPVQMV RLFGVNLLKL PGSEGVGGSC  360
NGKRKEMELF ALECSKKPKI IGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5418930811118DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362378KRKEMELFALECSKKPK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.39670.0flower| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g093600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591822.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M51e-137RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLG7I4920.0G7I492_MEDTR; AP2/ERF and B3 domain transcription factor
STRINGAES620730.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-139RAV family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  4. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  5. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  6. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  7. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]