PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g094085.1
Common NameMTR_1g094085
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 534aa    MW: 59614.5 Da    PI: 6.5074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g094085.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000534294611855
                      HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++  L++++ +      +K + a++L +A+ YIk+L+
  Medtr1g094085.1 429 DKITALQQIVSPF-----GKTDTASVLFEAIGYIKYLE 461
                      7888889988887.....8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.769411460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-9426475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-8426468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.43E-4429465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSEECGGNTI ATSTTPLNWW YLQANSLSSN WNDVKHAWNN QMNNPNSSSS CEDQDISVSS  60
TSFTNASNHS SLTVESSRRV FVEPHAPPSS NDFMAEHASD NQLWSHVLSG VDSNGELHNN  120
QEIGENFLDG LSSKTMTNTM FDEPACDYLK KLDTTSWEYN TSGSTSFNTN FEKHLNGYSE  180
ALIENNERLT KLSNLVSTWS IAPPDPEVSS HFDSQTNNNL STNLNNSNSS NMDHNHYTHD  240
SDPNCHFKLP FGDSTSCTIR EGVGNKMFPS CLDIQDMNKV KEEYHHHASE VMQGHVFRKS  300
LNPNGYLDGF NSVGDHNGKF YEGLPNISPC TKNFSDVISF NSRLGRPVVG IHPQRPNMRY  360
SNLSESKKQG LQTPSHMRTT NGRGEGTTRE VKKKRSEESS EASLKKPKQD TSTTNSSSKV  420
QAPKVKLGDK ITALQQIVSP FGKTDTASVL FEAIGYIKYL EEQVQLLSNP YLKANSHKDP  480
RGSYFDRKDK EDAKLDLRSK GLCLVPTSCT PIVYRENNGP DYWTPAYRGC MYR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.8430.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g094085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1350510.0BT135051.1 Medicago truncatula clone JCVI-FLMt-18M3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469430.10.0transcription factor bHLH111 isoform X1
TrEMBLA0A072VPZ10.0A0A072VPZ1_MEDTR; BHLH transcription factor-like protein
STRINGXP_004496220.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101162629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.19e-43bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]