PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g094930.2
Common NameMTR_1g094930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 237aa    MW: 25718.5 Da    PI: 9.9051
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g094930.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.1e-18149182134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Medtr1g094930.2 149 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 182
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-16143193IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.332143179IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15147206No hitNo description
Gene3DG3DSA:3.30.50.105.8E-15147180IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.62E-14148205No hitNo description
PROSITE patternPS003440149174IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15149182IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKVEQQPSSS AVSKEDSGHY QFQTPSPISV LESSSSCSGG KTTGIYVPIP VPCGRARTKR  60
PRPTAFNPRS AMQLISPTSS SVEENMQPNV ISTKAMSSDF ENFAESRIIV KKPKLSSGET  120
KKKKKIKAPL PTAPADSGEQ IGSLPVRKCM HCEITKTPQW RAGPMGPKTL CNACGVRYKS  180
GRLFPEYRPA ASPTFCPAVH SNSHKKVLEM RCKDSFESDS AELIPNTNVL ALEYNI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.82670.0flower| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g094930.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487570.0AC148757.4 Medicago truncatula clone mth2-57e16, complete sequence.
GenBankAC2023680.0AC202368.9 Medicago truncatula clone mth2-73h18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591890.11e-174GATA transcription factor 8
RefseqXP_024641078.11e-174GATA transcription factor 8
TrEMBLG7I3781e-172G7I378_MEDTR; GATA transcription factor
TrEMBLG7I3791e-173G7I379_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES621411e-173(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-44GATA family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]