PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g094960.1
Common NameMTR_1g094960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 620aa    MW: 68963.7 Da    PI: 7.6373
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g094960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23118219199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + 
  Medtr1g094960.1 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFL--RA 207
                      89****************************986445444..8************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  Medtr1g094960.1 208 ENGDLCVGIRRA 219
                      88999****997 PP
2Auxin_resp112.73.4e-37278361183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a ++  FevvY+Prast+eF+vkv++v++a++++++ GmRfkm fetedss++++ +Gt+++v+  dp+rWp+S+Wr+L+
  Medtr1g094960.1 278 AVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVHVQDPIRWPDSPWRLLQ 361
                      577888999*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-30109219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-38111222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-21117218No hitNo description
SMARTSM010195.6E-20118220IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126118220IPR003340B3 DNA binding domain
PfamPF023623.2E-21118219IPR003340B3 DNA binding domain
PfamPF065072.4E-32278361IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MFVVMDSMEK TSEKCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAH NKVDFSKTRV  60
PPLIPCRISA MKYMADPETD EVYVKMKLTP LRENELDFEE DCFFGNNGLE SQEKPASFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPRLDYS AEPPVQTIIA KDMHGQCWKF RHIYRGTPRR  180
HLLTTGWSNF VNHKKLVAGD SIVFLRAENG DLCVGIRRAK KGGIGGGTDQ FSNSSSTWNR  240
VSPLFGGVGS GFLCGNDNRK NGCDDLMGKV GAESVVEAVN CAVNGRSFEV VYYPRASTPE  300
FCVKVSSVKS AMQIQWCSGM RFKMPFETED SSRISWFMGT ISSVHVQDPI RWPDSPWRLL  360
QVVWDEPDLL QNVKCVNPWL VELVSNMPNF NLSPFTPPRK KPRFIQDPYF HLMNQSSSPS  420
ISNINLLNYT KSSLCNIQDT TTNSSFASSI QGARHAQFGP NYNNPSDLIP FNKLLQQDMF  480
LGNLSLSRFN QQQPITRPPY GPYKSINNNN NTKTNVDLSC LLSVGNSGQS FKESNIEAKA  540
PHNHNHILLF GKIIHTEQNS SNISKSDSVS EGTSLKTSNA SSSDPVENSS DGGSPWYKDQ  600
QHKSDLVGTE NVTTLCMAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-761138246388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.133960.0flower| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g094960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487570.0AC148757.4 Medicago truncatula clone mth2-57e16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591894.10.0auxin response factor 16
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A396JT480.0A0A396JT48_MEDTR; Auxin response factor
STRINGAES621450.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]