PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g096030.1

Common Name

MTR_1g096030

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

GRAS

Protein Properties

Length: 462aa MW: 52766.1 Da PI: 5.7841

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g096030.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	296	9.8e-91	77	459	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lLl+ A+ v++++l + L+ l +++s +gd++qR++ayft +L a+l+ + s y+ l ++t +ee+ a++ ++ vsP+++f+ Medtr1g096030.1 77 LIHLLLTTATSVDENNLDSSLENLTDLYQTVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPT----IDEEFLAFTDLYRVSPYFQFA 166 689**************************************************99999998877777....6899999999******* PP GRAS 95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnv 180 h+taNqaIlea+e+e + +H+iDfd+s+G+QWp+L+q+L++++ ++ s+R+Tg+g+ + +el+et++rL +f + + ++ fef+ Medtr1g096030.1 167 HFTANQAILEAFEKEeeknnRSIHVIDFDASYGFQWPSLIQSLSEKAtsGNRISFRLTGFGK----NLKELQETESRLVSFSKGFgNIVFEFQG 256 *********9988877889******************99755566*****....99***********9946*** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdslea 273 l l ++ +Lr k++E++aVnlv l ++ +l + ++++L +v sl+P +vv+veqe + s +Fl rf+++l+y++a+fdsl+ Medtr1g096030.1 257 L----LRGSRVINLRKKKNETVAVNLVSYLNKMS----CLLK-ITDTLGFVHSLNPSIVVIVEQEGSKnPSRTFLSRFTDTLHYFAAMFDSLDD 341 8....77778899*************9997....5555.688***************9995688****************** PP GRAS 274 klpreseerikvErellgreivnvvac....egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv........ksdg...yrve 352 lp es er +E++++g+ei++++ + eg ++ e++e+W++r+e+ GF +++s+k qaklll++ +++g +rv Medtr1g096030.1 342 CLPLESIERLRIEKKVFGKEIKSMLNNyddvEGGVDCAKYEKMETWKSRMENNGFVGMKMSSKCLIQAKLLLKMRthycplqfEEEGgggFRVS 435 *********************8633335666799******************************9852222221122223348887 PP GRAS 353 ee.sgslv.lgWkdrpLvsvSaWr 374 e+ +g ++ lgW++r L++vSaW+ Medtr1g096030.1 436 ERdDGRAIsLGWQNRFLLTVSAWQ 459 654566667************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.348	51	426	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-88	77	459	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MEADSEEDEL LNLSLSVNRE RKKKGKIIIS RENNNMMSTN RNSYEGYEGK IFHLLQMREQ 60 MLRKSTLNIE DSNGLPLIHL LLTTATSVDE NNLDSSLENL TDLYQTVSLT GDSVQRVVAY 120 FTDGLTAKLL TKKSPFYEML MEEPTIDEEF LAFTDLYRVS PYFQFAHFTA NQAILEAFEK 180 EEEKNNRSIH VIDFDASYGF QWPSLIQSLS EKATSGNRIS FRLTGFGKNL KELQETESRL 240 VSFSKGFGNI VFEFQGLLRG SRVINLRKKK NETVAVNLVS YLNKMSCLLK ITDTLGFVHS 300 LNPSIVVIVE QEGSKNPSRT FLSRFTDTLH YFAAMFDSLD DCLPLESIER LRIEKKVFGK 360 EIKSMLNNYD DVEGGVDCAK YEKMETWKSR MENNGFVGMK MSSKCLIQAK LLLKMRTHYC 420 PLQFEEEGGG GFRVSERDDG RAISLGWQNR FLLTVSAWQS L*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MEADSEEDEL LNLSLSVNRE RKKKGKIIIS RENNNMMSTN RNSYEGYEGK IFHLLQMREQ  60
MLRKSTLNIE DSNGLPLIHL LLTTATSVDE NNLDSSLENL TDLYQTVSLT GDSVQRVVAY  120
FTDGLTAKLL TKKSPFYEML MEEPTIDEEF LAFTDLYRVS PYFQFAHFTA NQAILEAFEK  180
EEEKNNRSIH VIDFDASYGF QWPSLIQSLS EKATSGNRIS FRLTGFGKNL KELQETESRL  240
VSFSKGFGNI VFEFQGLLRG SRVINLRKKK NETVAVNLVS YLNKMSCLLK ITDTLGFVHS  300
LNPSIVVIVE QEGSKNPSRT FLSRFTDTLH YFAAMFDSLD DCLPLESIER LRIEKKVFGK  360
EIKSMLNNYD DVEGGVDCAK YEKMETWKSR MENNGFVGMK MSSKCLIQAK LLLKMRTHYC  420
PLQFEEEGGG GFRVSERDDG RAISLGWQNR FLLTVSAWQS L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-55	70	458	12	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g096030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003591993.1	0.0	protein SCARECROW
TrEMBL	G7IAF8	0.0	G7IAF8_MEDTR; GRAS family transcription factor
STRING	AES62244	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	9e-56	GRAS family protein

Link Out ? help Back to Top
Phytozome	Medtr1g096030.1
Entrez Gene	11419428

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]