PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g098590.1
Common NameMTR_1g098590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 244aa    MW: 27228.8 Da    PI: 4.9291
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g098590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.19e-14161218359
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke.vakl 59 
                      + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN++L ke  e kke  ++l
  Medtr1g098590.1 161 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLMKEKAERKKErFKQL 218
                      679***************************************9776555555404544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000414.8E-594109IPR001630cAMP response element binding (CREB) protein
Gene3DG3DSA:1.20.5.1705.5E-12156220No hitNo description
PRINTSPR000414.8E-5158174IPR001630cAMP response element binding (CREB) protein
SMARTSM003383.9E-9159221IPR004827Basic-leucine zipper domain
PfamPF001702.8E-12161217IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932161213IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-9163214No hitNo description
CDDcd147073.14E-17163209No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
PRINTSPR000414.8E-5176196IPR001630cAMP response element binding (CREB) protein
PRINTSPR000414.8E-5196213IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MASSKLMPSS DPPSSPSSKP HFTTANFLDD QISLADAVAT PRTVDDVWRE IVAGDAISGD  60
RECKEEISDE MMTLEDFLVK AGAVEDEEEG EDVKMTIPLS ETLSGSGMFS LDSSFQGIEN  120
VDGSVIGFGN GNVNVNGVEM VEGGGRGKRG RPVMEQLDKA AQQRQRRMIK NRESAARSRE  180
RKQAYQVELE SLAVKLEEEN DKLMKEKAER KKERFKQLME KVIPVVEQRR PPRLLRRVRS  240
LQW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.69900.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g098590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1260140.0AC126014.6 Medicago truncatula clone mth2-18j5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592089.11e-177G-box-binding factor 4
SwissprotP427772e-54GBF4_ARATH; G-box-binding factor 4
TrEMBLG7IBY61e-175G7IBY6_MEDTR; BZIP transcription factor
STRINGAES623401e-176(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.15e-29G-box binding factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]