PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g098590.3
Common NameMTR_1g098590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 240aa    MW: 26542.9 Da    PI: 4.5991
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g098590.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.95.1e-14161213355
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      + +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN++L ke  e kke
  Medtr1g098590.3 161 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVKLEEENDKLMKEKAERKKE 213
                      679***************************************99887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000414.6E-594109IPR001630cAMP response element binding (CREB) protein
PRINTSPR000414.6E-5158174IPR001630cAMP response element binding (CREB) protein
SMARTSM003387.4E-10159223IPR004827Basic-leucine zipper domain
PfamPF001702.7E-12161214IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932161213IPR004827Basic-leucine zipper domain
CDDcd147074.20E-18163209No hitNo description
SuperFamilySSF579592.0E-9163214No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-12164218No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
PRINTSPR000414.6E-5176196IPR001630cAMP response element binding (CREB) protein
PRINTSPR000414.6E-5196213IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MASSKLMPSS DPPSSPSSKP HFTTANFLDD QISLADAVAT PRTVDDVWRE IVAGDAISGD  60
RECKEEISDE MMTLEDFLVK AGAVEDEEEG EDVKMTIPLS ETLSGSGMFS LDSSFQGIEN  120
VDGSVIGFGN GNVNVNGVEM VEGGGRGKRG RPVMEQLDKA AQQRQRRMIK NRESAARSRE  180
RKQAYQVELE SLAVKLEEEN DKLMKEKAER KKERFKQVLI YILCYCLLVC FGPFGKQYN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.69900.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g098590.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1260140.0AC126014.6 Medicago truncatula clone mth2-18j5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592089.11e-157G-box-binding factor 4
TrEMBLA0A072VQE41e-176A0A072VQE4_MEDTR; BZIP transcription factor
STRINGAES623401e-156(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.12e-28G-box binding factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]