PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g099140.1
Common NameMTR_1g099140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 542aa    MW: 61417.8 Da    PI: 9.7051
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g099140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.42.2e-08109189790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      A+++GFs+++ ks +s  ng+    t+ C + g+ +e k+k  ++r+   + + +C  +l+  +   g+w ++  + +HnH+++
  Medtr1g099140.1 109 ARKLGFSIVIGKSDNS-GNGRSAFVTLICERGGSYTEYKRK--SRRQIVGSVKRECPFRLRGYLLAGGEWSLKVGDGKHNHDMT 189
                      899*********9999.788899************999988..8888999999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-6109189IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MPALFSDMVV PVDAPNVDPH EIQPPNVLPL ILLEDVHDYG NAISENPPPP PQKLEISLGG  60
SKAEDAPPPI PPVVPPPIVA VCINQREHFT TKHKFATRND LLKWVGEKAR KLGFSIVIGK  120
SDNSGNGRSA FVTLICERGG SYTEYKRKSR RQIVGSVKRE CPFRLRGYLL AGGEWSLKVG  180
DGKHNHDMTD VLKGHKTVGH LNPNERVHLE EMVDSNVPPR QMFTNLKKMN RTTSTTIKHV  240
YNASYRYRRS IRDTRNGMQH LLKSLVDNGY VYHCRKYLDS EVVSDVFWAH PDSIKLFNKF  300
SMALERWREM LHSKDLYPKV VVTDRDNALI NDVENVFPKA TNMLLTDLKG KNGQAIKPAS  360
VVKTVMAAWT DIVDSDTEEA YIDNWTRFKT ILDLVKEKFV RFWVDKNLHM GNTTTNKVES  420
ALARLKKYLS SSMGNLSTNW QSVNNMLELQ HTTIHASFQT SIIMLEHRFK GKLLWSHLIR  480
RISREALHHL VVEYNKALEI GTDKSKCGCL SLITYGLLCA CMIGLKIKNG TALRLDEIHT  540
H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g099140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1518250.0AC151825.36 Medicago truncatula clone mth2-48b19, complete sequence.
GenBankAC2025990.0AC202599.13 Medicago truncatula clone mth2-88p11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634859.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLG7ID140.0G7ID14_MEDTR; FAR1 DNA-binding domain protein
STRINGAES623880.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]