PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g100667.1
Common NameMTR_1g100667
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 273aa    MW: 31237.2 Da    PI: 9.897
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g100667.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++ ++G g+W++++ + g+ R +k+c++rw +yl
  Medtr1g100667.1 15 KGLWSPEEDHKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding56.28e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
  Medtr1g100667.1  68 RGKFSKQEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                      89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-22965IPR009057Homeodomain-like
PROSITE profilePS5129417.991062IPR017930Myb domain
SuperFamilySSF466896.6E-2912109IPR009057Homeodomain-like
SMARTSM007175.7E-101464IPR001005SANT/Myb domain
PfamPF002495.2E-141562IPR001005SANT/Myb domain
CDDcd001671.45E-81862No hitNo description
PROSITE profilePS5129426.42663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2666117IPR009057Homeodomain-like
SMARTSM007179.2E-1767115IPR001005SANT/Myb domain
PfamPF002495.4E-1768113IPR001005SANT/Myb domain
CDDcd001672.12E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGFQPLEKTK PKHRKGLWSP EEDHKLRNYI LKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGK FSKQEEETIL TLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKRVAKA  120
MEMESHKQFQ YASSSSDTMN SSPSLQKLAT QDPHNYKSIT KETHQSTLPK LLFAEWLSLD  180
HVNNNNRNSS NSVESLVMRN GFDQNSAFQE VTMQEGPFNG EFHNSVTNIS ATEMFNSQIK  240
FANQIVGNGF VHCMPGVDLS NNFNLSNDAM YV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23111173108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g100667.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977341e-161BT097734.1 Soybean clone JCVI-FLGm-16G14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469682.10.0transcription factor LAF1
SwissprotQ9M0K41e-60LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A072W0780.0A0A072W078_MEDTR; Myb transcription factor
STRINGXP_004496837.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-61myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]