PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g101600.1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 203aa    MW: 22929.6 Da    PI: 5.2277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g101600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-183989155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+e+r+p   +k++r++lg+f t+e+Aa+a++ a+ +l+g
  Medtr1g101600.1 39 PVYRGVRKRD-SGKWVCEVREP---NKKTRIWLGTFPTPEMAARAHDVAAIALRG 89
                     68*****999.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-143989IPR001471AP2/ERF domain
PROSITE profilePS5103222.554097IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-214099IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-324099IPR001471AP2/ERF domain
SMARTSM003804.9E-3140103IPR001471AP2/ERF domain
CDDcd000185.13E-314199No hitNo description
PRINTSPR003677.4E-94152IPR001471AP2/ERF domain
PRINTSPR003677.4E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNQFSESHDP CSSSSERFLA ETMPKKRAGR KKFRETRHPV YRGVRKRDSG KWVCEVREPN  60
KKTRIWLGTF PTPEMAARAH DVAAIALRGR SACLNFADSA WKLPVPATSE ARDIQKAAAE  120
AAEAFRPESV FENSEERKDS EPSSTVAVSE TVMEQREEEE DTVPEYLRNM VLMSPAHYWG  180
SDCGVADVEF DETEVSLWSY SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1438961271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.69590.0root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g101600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2025160.0AC202516.13 Medicago truncatula clone mth2-67c18, complete sequence.
GenBankAC2120120.0AC212012.3 Medicago truncatula clone mth2-65h3, complete sequence.
GenBankHQ1100790.0HQ110079.1 Medicago truncatula CRT/DRE binding factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592322.21e-148dehydration-responsive element-binding protein 1A
SwissprotQ9FJ936e-64DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLE1AXT31e-147E1AXT3_MEDTR; CRT/DRE binding factor 4
STRINGAES625731e-147(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-63dehydration response element B1A
Publications ? help Back to Top
  1. Li D, et al.
    Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses.
    BMC Plant Biol., 2011. 11: p. 109
    [PMID:21718548]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  4. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  5. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  6. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]