PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g102370.1
Common NameMTR_1g102370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 245aa    MW: 28130.2 Da    PI: 9.4529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g102370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-1075127155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++ h e+E++RR+++ +    Lr+llP  +   ++K s ++   +Av+YI++L+
  Medtr1g102370.1  75 KKMVHREIEKQRRQEMATLHTSLRSLLPLHF--IKGKRSLSDQMNEAVNYINHLK 127
                      6889*************************65..********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-1173143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.00874126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-774128No hitNo description
PfamPF000102.1E-775126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-875142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MFPLQRCNEL AKPLSNSLNH HQHHKISEDL ILDDCDSLVI DFSLKKMDTN RPPNKLFYID  60
RANHGSNRNS IEDKKKMVHR EIEKQRRQEM ATLHTSLRSL LPLHFIKGKR SLSDQMNEAV  120
NYINHLKKNM KELSYKRDEL KKLSNPSLKN KSHVSCSFTI HKNNRTVGIE ISTKTGFIEE  180
GAPLSKFLEQ LMRYGLDVVS CFSIQVNGKL LHSVQCEVIN SDSVDLTELR RNLSNLNPSF  240
SCSD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.223950.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g102370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0532230.0BT053223.1 Medicago truncatula clone MTYFP_FQ_FR_FS1G-D-18 unknown mRNA.
GenBankBT1478350.0BT147835.1 Medicago truncatula clone JCVI-FLMt-10F5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592388.21e-179transcription factor bHLH118 isoform X2
TrEMBLG7ID491e-178G7ID49_MEDTR; Putative transcription factor bHLH family
STRINGAES626391e-168(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-32bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]