PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g102380.1
Common NameMTR_1g102380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 192aa    MW: 21557.9 Da    PI: 7.5056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g102380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.6e-062370554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                       e+E++RR ++    + Lr+ lP  +    ++K s ++   +A +Y++ L
  Medtr1g102380.1 23 RREVEKQRRMQMSILCSSLRSSLPFdL---IKGKRSVSDHIGEAANYVQIL 70
                     679**********************77...*****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-91587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.62E-41874No hitNo description
PROSITE profilePS5088810.3021870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-62188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAEDQNQHKI LTTSDNDDKK MIRREVEKQR RMQMSILCSS LRSSLPFDLI KGKRSVSDHI  60
GEAANYVQIL KQKINELEIK RDKMKEMVSS SRVETGNELS ADPSSVVKCV KIDLIPGGVE  120
IVICSGLEDY SSRLSDLMKI ILQEGCDVVH CVTNQVNGKI FHTIKSEVED LAHLNLARLQ  180
NKLDHAILLS R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.233330.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g102380.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1493040.0AC149304.11 Medicago truncatula clone mth2-76g4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592389.11e-137transcription factor bHLH118
TrEMBLG7ID501e-135G7ID50_MEDTR; Putative transcription factor bHLH family
STRINGAES626401e-136(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-29bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]