PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g103180.1
Common NameMTR_1g103180
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CPP
Protein Properties Length: 367aa    MW: 39979.1 Da    PI: 4.339
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g103180.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR361.4e-11171209240
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      ++k+C+Ckk +Clk+ CeCfaa+++C+ +C+CedC Nk 
  Medtr1g103180.1 171 TCKNCHCKKLECLKLCCECFAARVYCTGTCSCEDCLNKP 209
                      589**********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.5E-8170211IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163410.438171221IPR005172CRC domain
PfamPF036381.1E-7173208IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDAKEKKNTP ISNSEEGVAS GSTHGIGVNA SEPIAATDIV QTQGNLSNVA LRDTNRSRRD  60
EEDDALFDYL NSLSPLKSKK YDGVGATMTL NSLGMYYPLV NAPPGNDFDL NVPYDGMENE  120
GNDFDLNVPY EGIENEITSS GRQPELPNCA ASFHIYESQG HESDLSGEEG TCKNCHCKKL  180
ECLKLCCECF AARVYCTGTC SCEDCLNKPI NEDSVLQAGR NEHFKLDSKC VVDTLDNKNP  240
GMSEDHSLVI NSLPALLDQQ EPDVACVQDG SIEGSNCDNN LCTTKSDERN ASIENETVSS  300
ERKPELPRCT SYGSQGHRLP QVPASMEIHL RPSEIEVDAA EDITQSPVHI AGEDFCQSTP  360
KRKRKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359365PKRKRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g103180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VP780.0A0A072VP78_MEDTR; Tesmin/TSO1-like CXC domain protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]