PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g103380.1
Common NameMTR_1g103380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 490aa    MW: 56234.9 Da    PI: 8.0656
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g103380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1394e-432003373135
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec.eaesssssasnss 86 
                      gkkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL++++ +aikel++t         +++++  + +++s+        
  Medtr1g103380.1 200 GKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTknaacynnnNNDNS-PFfDSNSN-------- 284
                      79*************************************************************55444433211111.11122222........ PP

              TCP  87 sg.........kaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135
                       +          +++s+  k k +qk+     + +kesr++arararert  km+ + +
  Medtr1g103380.1 285 -KsfsgggggdGSCSSKGrKLKWTQKE-----ETKKESRERARARARERTCYKMCSSGR 337
                      .13445556555666665344444444.....4699*******************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-39200334IPR005333Transcription factor, TCP
PROSITE profilePS5136934.163201259IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.643314331IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGVREERAFF GIEMKLCGRA FKKNTEFEVC ITNLYYNFSL FRKMKMQFFL TELVYLRLSF  60
IQRRQYRSRE ATTVLNCDLF HTIPRVFNHW FQMFSFPNNF PSSSSSSSYP NSTLSFLIDN  120
PENNDFPNNN TTLLDDSLLS IPFTSTHHDV VPFPDTNFAD CNNTAMFEQD NGYNFGVTSS  180
FPIPNFVVTE QKQPATVIGG KKDRHSKIHT SQGLRDRRVR LSSEIARKFF DLQDMLEFDK  240
PSNTLEWLFT KSDTAIKELA RTKNAACYNN NNNDNSPFFD SNSNKSFSGG GGGDGSCSSK  300
GRKLKWTQKE ETKKESRERA RARARERTCY KMCSSGRMQQ EEIRYPGPGA DSTNTQQMLQ  360
QLISSSTSPV DSTETEAYAR WRQLLQLQTY SNPSFHNHHN LLDSEIPRDH GGFNVIEESI  420
MIKRNMMSAT SSQYHHQNLI PTIPKELPSF NHNINDYSLF PCSTPNWETS SNFCGIATMN  480
LSTCFLNPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316326RERARARARER
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g103380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630896.10.0transcription factor DICHOTOMA
TrEMBLA0A072VQD10.0A0A072VQD1_MEDTR; TCP family transcription factor
STRINGXP_004496702.11e-120(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-23TCP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]