PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g105425.1
Common NameMTR_1g105425
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 153aa    MW: 17939.4 Da    PI: 10.2541
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g105425.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.66.8e-11108151245
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 
                      r+  ++t++ ++e+e++Fe+++ p+ ++r++L+ +lgLt +q+k
  Medtr1g105425.1 108 RSNFRHTQKHIQEMESFFEQCPLPNGKQRKQLSCELGLTPAQIK 151
                      44456788889********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1094151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-1194151IPR009057Homeodomain-like
PROSITE profilePS500719.345104152IPR001356Homeobox domain
CDDcd000862.92E-7107151No hitNo description
PfamPF000461.6E-8108151IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MYAKHQMWSL SIEIQTLVHP VMRVKKKIQA ILIFITRNFK HNNFETSAKH QNVVDHPQPV  60
QKQQFRDMPI NITSSIGDLE RCNQNQNSRN EALSSLQDQD PNHHQQRRSN FRHTQKHIQE  120
MESFFEQCPL PNGKQRKQLS CELGLTPAQI KF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g105425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496853.18e-19homeobox-leucine zipper protein MERISTEM L1-like
TrEMBLA0A072VQJ21e-109A0A072VQJ2_MEDTR; Homeobox domain protein
STRINGXP_004496853.13e-18(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.46e-19homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]