PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g105905.1
Common NameMTR_1g105905
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 221aa    MW: 24972.5 Da    PI: 10.593
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g105905.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.8e-21247449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +n+sn qvtfskRr g++KKA+EL++ C+a+va+++fs+  k++ +
  Medtr1g105905.1  2 SNESNLQVTFSKRRSGLFKKASELCTICGADVALVVFSPGEKVFSF 47
                     79***************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-21150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.212151IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-23266IPR002100Transcription factor, MADS-box
PfamPF003191.7E-23247IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-91328IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-92849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSNESNLQVT FSKRRSGLFK KASELCTICG ADVALVVFSP GEKVFSFGQP NVDTLIDRYL  60
SQVPPKNNGT MQFIKAHRRS NVRGLNSQLT QINQLLHNEK KRAEELRHLR KATETQFWWA  120
GPVNGMSRDQ LEFFKKALEA LSKLVAYHAD RLVIQSAPTQ IFPFFVGNGS SFNMPLDHQS  180
NPPQTQMFPT QFFQNPMLQP HLFGFNNVRG GGGYGPFRFF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g105905.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453310.0AC145331.19 Medicago truncatula clone mth2-8o7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469940.11e-163agamous-like MADS-box protein AGL62
TrEMBLA0A072VRD41e-162A0A072VRD4_MEDTR; MADS-box transcription factor family protein
STRINGAET025831e-135(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-55AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]