PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g106470.2
Common NameMTR_1g106470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 241aa    MW: 26828.7 Da    PI: 5.3814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g106470.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.4e-06211231929
                      HHHHHHHHHHHHHHHHCTSCC CS
              HLH   9 ErrRRdriNsafeeLrellPk 29 
                       r+RR+riN+++  L++l+P+
  Medtr1g106470.2 211 ARKRRERINERLRILQTLVPN 231
                      59******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.934202240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-5204234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-4206232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-4211236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEPAQLISEE WDSLSGQYTA EEADFMNQFL SGNKNTSFGM PSYFPHADFM CFSQGSSTTS  60
SGTYSCDLAT NFDSLSMFFC LEDAKFSPQY LDDSISKHIN NDIIDHKGSC LEPSSEEDRS  120
TNMENPAKRF RSSLEVSENT RNVRKCPKSA SMSNNEEGLM WNGTNNRFSH VDSIGGIISS  180
SLSPKEHEAP KLGRKSRAAS SPATDAQSIY ARKRRERINE RLRILQTLVP NGTKVDFLIN  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.68420.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g106470.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592481.11e-177transcription factor bHLH84
TrEMBLA0A072VPT21e-179A0A072VPT2_MEDTR; Transcription factor
STRINGAES627321e-176(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]