PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g106590.1
Common NameMTR_1g106590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 343aa    MW: 38704.3 Da    PI: 5.6955
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g106590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS106.53.6e-331292413117
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +l ++cA++v+ g+le+a+++L+++s+la pd d+mqR+aayfteAL  r+++++++l + l++++      see++++k+f+e++P+lk++++
  Medtr1g106590.1 129 RLSITCANHVAYGSLENANTTLEQISQLAIPDEDTMQRIAAYFTEALTDRIHKTWPGLHRGLNSTRII--MLSEEIMVQKFFFELFPYLKVAYI 220
                      56689*******************************************************99988886..69********************** PP

             GRAS  97 taNqaIleavegeervHiiDf 117
                      ++ qaI+e++ege++vHii +
  Medtr1g106590.1 221 LTDQAIVESMEGEKMVHIIEI 241
                      *******************75 PP
2GRAS58.31.7e-18282340218278
             GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       s   + +++L++++slsPkv+vv+eq+++ ns++++er+leal  y+alfd+le++++r+
  Medtr1g106590.1 282 DS--MNVENFLNALWSLSPKVMVVTEQDSNQNSSTLMERLLEALCSYAALFDCLESTVSRT 340
                      22..24688***********************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.660.102.5E-2137124No hitNo description
PROSITE profilePS5098515.563101342IPR005202Transcription factor GRAS
PfamPF035141.3E-30129241IPR005202Transcription factor GRAS
PfamPF035145.8E-16282340IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEVEEFDREK KNLAWKMTAE RFARQWQNLK GFCHYLCFLK GIDSVSWMAN NTKKLLASQS  60
NGPHCWTFLS TAAYEKQNKV PQKNIPTVTA TRVREGMLEG VEAALGLSKG SPPKPFYTKL  120
QLWGLYLIRL SITCANHVAY GSLENANTTL EQISQLAIPD EDTMQRIAAY FTEALTDRIH  180
KTWPGLHRGL NSTRIIMLSE EIMVQKFFFE LFPYLKVAYI LTDQAIVESM EGEKMVHIIE  240
ILFSMLMNQN TSLGDLFEKD MVNGYSPSPS STSSSSTASS SDSMNVENFL NALWSLSPKV  300
MVVTEQDSNQ NSSTLMERLL EALCSYAALF DCLESTVSRT IW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1413433626280Protein SCARECROW
5b3h_A2e-1413433625279Protein SCARECROW
5b3h_D2e-1413433625279Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g106590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2335691e-159AC233569.4 Medicago truncatula clone mth2-73i21, complete sequence.
GenBankCR9550081e-159CR955008.2 Medicago truncatula chromosome 5 clone mte1-51b2, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626784.12e-86scarecrow-like protein 3
SwissprotQ9LPR89e-48SCL3_ARATH; Scarecrow-like protein 3
TrEMBLG7IEU30.0G7IEU3_MEDTR; GRAS family transcription factor
STRINGAES627440.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-50scarecrow-like 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]