PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g106730.1
Common NameMTR_1g106730
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 252aa    MW: 27265.4 Da    PI: 8.6077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g106730.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009983105123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ C+k F++   L  H  +H
  Medtr1g106730.1  83 HKCSVCNKAFPSYQALGGHKASH 105
                      79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.85E-883153No hitNo description
PfamPF139129.2E-1483107IPR007087Zinc finger, C2H2
PROSITE profilePS501579.53683110IPR007087Zinc finger, C2H2
SMARTSM003550.01583105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411131153IPR007087Zinc finger, C2H2
PfamPF139123.6E-13131155IPR007087Zinc finger, C2H2
SMARTSM003550.19131153IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MALELQTLNS SPTGATTTIP IPFPRFKQEE NQERESLVKK KRSKRPRIGI GNPPTEEEYL  60
ALCLIMLSQS NNQIQSSPLK LNHKCSVCNK AFPSYQALGG HKASHRKSSS ENQSTTVNET  120
ISVSVSTSKM HECSICHKSF PTGQALGGHK RCHYEGVINN NHNHNNSNSS GITVSDAGAA  180
SSSISHRGFD LNLPAPLTEF WSPVGFGGGD SKKNKVNVNL AGINEQEVES PLPVTAKRPR  240
LFSGEDNDET V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143250.0flower| leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g106730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1398402e-62BT139840.1 Medicago truncatula clone JCVI-FLMt-14M12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592502.10.0zinc finger protein ZAT10
TrEMBLG7IEV20.0G7IEV2_MEDTR; C2H2-type zinc finger protein
STRINGAES627530.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-43salt tolerance zinc finger
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]