PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g107015.1
Common NameMTR_1g107015
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-PHD
Protein Properties Length: 927aa    MW: 101403 Da    PI: 4.8923
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g107015.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.81.8e-137598041156
                      HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++L + F++n+yp ++++e LA++lgLt +qV  WF N R + +
  Medtr1g107015.1 759 VVQRLHKSFKENQYPERTAKESLAQELGLTFQQVDKWFGNSRWRFR 804
                      5799**************************************9988 PP
2PHD37.26.7e-13412467151
                      SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ C+     ++++++lCdg C++ +H+ Cl+++l +e++p g   wlC+ C++k
  Medtr1g107015.1 412 FCAKCQTkvLGTNNDIILCDGaCDRGYHQLCLDPPLLTEDIPPGdeGWLCPGCDCK 467
                      6999**988888********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-13402470IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.0E-12409466IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.638410467IPR019787Zinc finger, PHD-finger
CDDcd155041.34E-26412464No hitNo description
PfamPF006284.1E-10412467IPR019787Zinc finger, PHD-finger
SMARTSM002491.2E-9412465IPR001965Zinc finger, PHD-type
PROSITE patternPS013590413464IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.609.5E-14722806IPR009057Homeodomain-like
PROSITE profilePS5007114.123746806IPR001356Homeobox domain
SMARTSM003892.5E-12748810IPR001356Homeobox domain
SuperFamilySSF466891.07E-12754814IPR009057Homeodomain-like
PfamPF000465.3E-11759804IPR001356Homeobox domain
CDDcd000862.73E-12760807No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MKKEKNGSPD LEESNLLSSS SSSPDGDYYV THNYILNSIQ SLLAGCKSAV DFGKAKSVVA  60
VKASCTRGLC SLHCHLCCST GKSTSPNDFT TEKIGTEQRD MSEKTTQVGS ECLDKEQSVL  120
GTVVTDSVID EKSNNISVNM TENSVIQLPG EMRDAVTTLV EEQPQPVPVQ VKSNSVNELL  180
DPPSGDVAKN ISSQNEPGET SDAVTGLVED QTQSVPAQVK TESSGDAAKN NSSDCSERKS  240
KNLGQMRVKH GAIKNSKLSK KYVLRSLGSS DRALRSRTKD DKPKDPEPIN TVTDVNNDEI  300
KTKERRKKKK KKTRKEGIND QFSKIRAQLR YYLNRISYEQ NLIDAYSGEG WKGSSMEKLK  360
PEKEIQRAKS EILRRKLKIR DLFQNLDSLC AEGRLPESLF DSEGEIDSED IFCAKCQTKV  420
LGTNNDIILC DGACDRGYHQ LCLDPPLLTE DIPPGDEGWL CPGCDCKDDC IELVNDLLGT  480
SLSLTDSWER VFPEAATAAG SILDHNLGLP SDDSDDDDYN PDGPEDVKVE GGKSSSDESE  540
YASASEKFED PGHEDQYMGL PSEDSEDDDF DPDAPNPGAK DIEESSSSDF TSDSEDLAAT  600
IKDNMSTGQD DVTSAPLDDV KNFKGSSKQN RKKPSITDEL SSLAEPDLGE EDLTPVSGKR  660
NVERLDYQKL YEETYHSDTS DDEDWADTTT PSRKKKLTAK ITPGSPNGNA SNNSRRTAKR  720
NTHQHKVENT NNSPTKTLEG CTESGKKRGS SYCKLGEAVV QRLHKSFKEN QYPERTAKES  780
LAQELGLTFQ QVDKWFGNSR WRFRHSSCKE ASPGSNASQQ ANDSGAKNKG DNASQQASES  840
GAENKGDRGN ASQQATDSGG ENKRETEHQL VSQETSGEKS KTPSSKKRKR LSEPQTSEAG  900
LVRNGSTFDC LPVAGTSNKM KKKKGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303309ERRKKKK
2304310RRKKKKK
3305311RKKKKKK
4306314KKKKKKTRK
5714720RRTAKRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.255250.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g107015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470010.10.0homeobox protein HAT3.1 isoform X1
RefseqXP_024626899.10.0homeobox protein HAT3.1 isoform X1
TrEMBLA0A072VPV40.0A0A072VPV4_MEDTR; Homeobox KN domain protein
STRINGXP_004496910.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-87Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]