PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g107015.2
Common NameMTR_1g107015
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-PHD
Protein Properties Length: 827aa    MW: 90741.3 Da    PI: 4.7839
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g107015.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox421.6e-136597041156
                      HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++L + F++n+yp ++++e LA++lgLt +qV  WF N R + +
  Medtr1g107015.2 659 VVQRLHKSFKENQYPERTAKESLAQELGLTFQQVDKWFGNSRWRFR 704
                      5799**************************************9988 PP
2PHD37.45.8e-13312367151
                      SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ C+     ++++++lCdg C++ +H+ Cl+++l +e++p g   wlC+ C++k
  Medtr1g107015.2 312 FCAKCQTkvLGTNNDIILCDGaCDRGYHQLCLDPPLLTEDIPPGdeGWLCPGCDCK 367
                      6999**988888********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.65E-13302370IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.6E-12309366IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.638310367IPR019787Zinc finger, PHD-finger
CDDcd155042.28E-27312364No hitNo description
SMARTSM002491.2E-9312365IPR001965Zinc finger, PHD-type
PfamPF006283.5E-10312367IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590313364IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007114.123646706IPR001356Homeobox domain
SMARTSM003892.5E-12648710IPR001356Homeobox domain
SuperFamilySSF466899.41E-13654714IPR009057Homeodomain-like
PfamPF000464.7E-11659704IPR001356Homeobox domain
CDDcd000863.89E-12660707No hitNo description
Gene3DG3DSA:1.10.10.609.8E-14660710IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MSEKTTQVGS ECLDKEQSVL GTVVTDSVID EKSNNISVNM TENSVIQLPG EMRDAVTTLV  60
EEQPQPVPVQ VKSNSVNELL DPPSGDVAKN ISSQNEPGET SDAVTGLVED QTQSVPAQVK  120
TESSGDAAKN NSSDCSERKS KNLGQMRVKH GAIKNSKLSK KYVLRSLGSS DRALRSRTKD  180
DKPKDPEPIN TVTDVNNDEI KTKERRKKKK KKTRKEGIND QFSKIRAQLR YYLNRISYEQ  240
NLIDAYSGEG WKGSSMEKLK PEKEIQRAKS EILRRKLKIR DLFQNLDSLC AEGRLPESLF  300
DSEGEIDSED IFCAKCQTKV LGTNNDIILC DGACDRGYHQ LCLDPPLLTE DIPPGDEGWL  360
CPGCDCKDDC IELVNDLLGT SLSLTDSWER VFPEAATAAG SILDHNLGLP SDDSDDDDYN  420
PDGPEDVKVE GGKSSSDESE YASASEKFED PGHEDQYMGL PSEDSEDDDF DPDAPNPGAK  480
DIEESSSSDF TSDSEDLAAT IKDNMSTGQD DVTSAPLDDV KNFKGSSKQN RKKPSITDEL  540
SSLAEPDLGE EDLTPVSGKR NVERLDYQKL YEETYHSDTS DDEDWADTTT PSRKKKLTAK  600
ITPGSPNGNA SNNSRRTAKR NTHQHKVENT NNSPTKTLEG CTESGKKRGS SYCKLGEAVV  660
QRLHKSFKEN QYPERTAKES LAQELGLTFQ QVDKWFGNSR WRFRHSSCKE ASPGSNASQQ  720
ANDSGAKNKG DNASQQASES GAENKGDRGN ASQQATDSGG ENKRETEHQL VSQETSGEKS  780
KTPSSKKRKR LSEPQTSEAG LVRNGSTFDC LPVAGTSNKM KKKKGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209ERRKKKK
2204210RRKKKKK
3205211RKKKKKK
4206214KKKKKKTRK
5614620RRTAKRN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.255250.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g107015.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470010.10.0homeobox protein HAT3.1 isoform X1
RefseqXP_024626899.10.0homeobox protein HAT3.1 isoform X1
TrEMBLA0A072VRI30.0A0A072VRI3_MEDTR; Homeobox KN domain protein
STRINGXP_004496910.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.16e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]