PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g110840.1
Common NameMTR_085s0021, MTR_1g110840
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 238aa    MW: 26191 Da    PI: 9.0844
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g110840.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26080.52.6e-254109199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqql 87 
                      +C++C+vlr++C++dC++ p++     p++q +++ +++k++G++ +l+ll+++ +++   +++++sl+yeA  r+ +P yGa+g++++  +  
  Medtr1g110840.1   4 SCNGCRVLRKGCSDDCIIKPCLewiscPESQGHATLFLAKFYGRTGLLNLLTNATNQNdnPPAVFKSLLYEAAGRLVNPTYGALGLFWTADWSR 97 
                      6***************************************************9965553479******************************** PP

           DUF260  88 eqlkaelallke 99 
                      +++++e++l+++
  Medtr1g110840.1  98 CEAAVEAVLTGS 109
                      ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.1423111IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-204106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKLSCNGCRV LRKGCSDDCI IKPCLEWISC PESQGHATLF LAKFYGRTGL LNLLTNATNQ  60
NDNPPAVFKS LLYEAAGRLV NPTYGALGLF WTADWSRCEA AVEAVLTGSN INDSFTMIDG  120
QTSSGTFNAE NHVHPKTYDI RHVAKGTNVD IKGKTQFKRV GQLLKLKPRV GSVDSSTMLK  180
SLLKNTNMEI GETSSRVQTE KINEAVENQV NLKLTLGFDC QSTKGKKILD KRSIYYM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g110840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470179.11e-178LOB domain-containing protein 42
SwissprotQ9CA301e-49LBD42_ARATH; LOB domain-containing protein 42
TrEMBLG7ZZB81e-177G7ZZB8_MEDTR; LOB domain protein
STRINGAES845561e-178(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-46LOB domain-containing protein 42
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]