PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g110870.1
Common NameMTR_1g110870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 437aa    MW: 48793.5 Da    PI: 5.3153
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g110870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.63e-091760340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ +  k+++++C  ++ +lC+ C ++ H+       H++v
  Medtr1g110870.1 17 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnslarrHERV 60
                     578*****************************657788888876 PP
2CCT682.5e-23382425144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Medtr1g110870.1 382 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 425
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.4E-101562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9361562IPR000315B-box-type zinc finger
PfamPF006436.8E-81760IPR000315B-box-type zinc finger
CDDcd000213.91E-91862No hitNo description
PROSITE profilePS5101716.083382424IPR010402CCT domain
PfamPF062037.3E-18382424IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MTCSSKNVAN AVGGKTARAC DSCITKRARW YCAADDAFLC QACDSSVHSA NSLARRHERV  60
RLKTASYKSI NGDEFFNCGP FSGFTKKART PRQGKHKSKS SSSSEPARNN NNIPFHLVPE  120
LGFDEVNSNS IEENEAQLLY RVPIFDPSIA DLCTSPPSVC STEGGLGVVV VASAFAPDVK  180
NNESESRVQL GSDNNYEMES FHGLLPSDIE LAEFAADVES LLGRGLENEC IGMEELGLID  240
TKHEESEKWK CGGKVKEEGE ECYEVVEGDN MMEIGKESSF ELNFDYDDSH ETCEEVKEKC  300
GEQNENNDYN KGKRKISLQL DYDAVIIAWD SQKCPWTNGD KPILDADENW PDCMGTFGTE  360
VHYAYGEFGG YGCHPVMVDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR  420
FVKRASFAVP TFPLLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392408RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.86190.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g110870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470181.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A072VQB90.0A0A072VQB9_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGXP_004497095.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-101B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]