PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g111830.1
Common NameMTR_077s0043, MTR_1g111830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 245aa    MW: 27600.6 Da    PI: 6.6103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g111830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.84.9e-082366344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT + d+l+ +a  + + +   +W++Ia+ ++ g+++ ++++++
  Medtr1g111830.1 23 QWTRDHDKLFERALLMVPEDlpdRWEKIAEQVP-GKSAAEIRDHY 66
                     6*****************99*************.**********9 PP
2Myb_DNA-binding45.51.8e-14125169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Medtr1g111830.1 125 PWTEEEHRLFLIGLTKFGKGDWRSISRNVVVTRTPTQVASHAQKY 169
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.841976IPR017884SANT domain
SMARTSM007177.3E-62072IPR001005SANT/Myb domain
SuperFamilySSF466896.06E-112278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-52370IPR009057Homeodomain-like
PfamPF002492.4E-72367IPR001005SANT/Myb domain
CDDcd001671.98E-62470No hitNo description
PROSITE profilePS5129420.667118174IPR017930Myb domain
SuperFamilySSF466896.7E-17120175IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-17121173IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-11122168IPR009057Homeodomain-like
SMARTSM007172.1E-10122172IPR001005SANT/Myb domain
CDDcd001676.47E-9125170No hitNo description
PfamPF002491.6E-11125169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MYRESVAMAT TTAATRWPTQ PTQWTRDHDK LFERALLMVP EDLPDRWEKI AEQVPGKSAA  60
EIRDHYEALV HDILEIDSGR VEVPSYSDES AVSGGGLAEW DSSNQISFGS KPRHGGDNER  120
KKGTPWTEEE HRLFLIGLTK FGKGDWRSIS RNVVVTRTPT QVASHAQKYF LRQNSVKKER  180
KRSSIHDITS VDSNSAPVPI DQNWVPPPGG GSMQQQSPEM HHYPSNNLQD QMSAYGYSNY  240
GFQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-141397280RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g111830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350080.0AC235008.3 Medicago truncatula clone mth2-151p16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470249.10.0transcription factor DIVARICATA
SwissprotQ9FNN62e-59SRM1_ARATH; Transcription factor SRM1
TrEMBLG7ZYT00.0G7ZYT0_MEDTR; MYB-like transcription factor family protein
STRINGAES843680.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60683251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-81MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]