PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g114380.1

Common Name

MTR_1g114380

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

TCP

Protein Properties

Length: 258aa MW: 27430.6 Da PI: 10.1468

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g114380.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.1	5.5e-37	27	185	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg... 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + +s++s + Medtr1g114380.1 27 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSslsvS-----LRGSSNSLPsps 115 789*************************************************************9999977743221.....222222222333 PP TCP 89 .....................................................................k 89 + Medtr1g114380.1 116 stsldhkpllsptpfilgkrirtdddsssssakddalsvgslstpaalwalparpdfgqiwsfaaaaagA 185 4456666666666666666665555555555555555555555556666666666666666555555551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	33	87	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.1E-34	33	196	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSNPDGTTTT TTTTNGSIID PNRQQLAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSSL SVSLRGSSNS LPSPSSTSLD 120 HKPLLSPTPF ILGKRIRTDD DSSSSSAKDD ALSVGSLSTP AALWALPARP DFGQIWSFAA 180 AAAGAPPPEM MVQSLSQQQH QVQANFFAHH HQQQQHQQAM GEASAARVGN YLPGHLNLLA 240 SLSGGHGNSG RRDDEHH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.10177	0.0	flower\| root\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g114380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151824	0.0	AC151824.13 Medicago truncatula clone mth2-45n18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003592726.1	0.0	transcription factor TCP7
Swissprot	Q9FMX2	1e-96	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G7IE92	0.0	G7IE92_MEDTR; Putative transcription factor TCP family
STRING	AES62977	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-62	TCP family protein

Link Out ? help Back to Top
Phytozome	Medtr1g114380.1
Entrez Gene	11423879

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]