PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g116790.1
Common NameMTR_1g116790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 344aa    MW: 37207.5 Da    PI: 8.299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g116790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.5e-11277322655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Medtr1g116790.1 277 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 322
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14274335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.93E-11275326No hitNo description
Gene3DG3DSA:4.10.280.103.1E-13276334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MYRPPSSSAS SSSSSSQQQQ SSISQTGLTR YGSAPSSLLN TTVDAIIGGS RLLPGTGQHY  60
FSDDSTQQQQ QHHHQQQQQQ QQQRSSYEGQ GGGFDGSALL RQKSSPAGFL NHLATLNHNN  120
NNNNNNNNAG GGFTITRGNS RLKSELSFTG GGQECLSRIS ENVVDYASAA AAAGNGSLHT  180
NSTNTWGGGG PDNNNNSNSI VFSSSQTQTN NNSKKRSSRT DPNDDPDLLL HCLNALETQY  240
SLPQTSLEMD QLMHNIPQDS VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQDLVPN  300
MDKQTSYSDM LDLAVQHIKG LQTQVQKLHE DLENCTCGCK QST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.172980.0glandular trichome| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g116790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592849.10.0transcription factor bHLH128 isoform X1
SwissprotQ8H1022e-64BH128_ARATH; Transcription factor bHLH128
TrEMBLG7IB140.0G7IB14_MEDTR; Putative transcription factor bHLH family
STRINGAES631000.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]