PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g116940.1
Common NameMTR_1g116940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 259aa    MW: 27341.9 Da    PI: 7.978
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g116940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-096287227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     kt+lC+ f     Ck+Gd+C+FaHg+
  Medtr1g116940.1 62 KTRLCNKFNTAEGCKFGDKCHFAHGE 87
                     8***********************96 PP
2zf-CCCH33.57.3e-11225249126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC +f + G C +G+rC+FaHg
  Medtr1g116940.1 225 FKTKLCENFTK-GSCTFGERCHFAHG 249
                      69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.883121IPR000571Zinc finger, CCCH-type
PfamPF146081.4818No hitNo description
SuperFamilySSF902292.49E-85891IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-145891IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2636188IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-76287IPR000571Zinc finger, CCCH-type
SMARTSM003560.00746287IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-12130204IPR004088K Homology domain, type 1
SMARTSM003225.2E-8131201IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.1E-12131202IPR004088K Homology domain, type 1
PROSITE profilePS5008411.804132196IPR004088K Homology domain, type 1
CDDcd001051.62E-10134197No hitNo description
PfamPF000132.2E-8134197IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.3E-16222256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9224254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.699224251IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7224250IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8225249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVYITSGCPF GEGCHFLHYV PGGFKAVYQM INVGSSPAIP PIGRNPNVPQ SFPDGSSPPV  60
AKTRLCNKFN TAEGCKFGDK CHFAHGEWEL GRPTVPAYED TRAMGQMQSS SVGGRIEPPP  120
PAHGAAAGFG VSATATVSIN ATLAGAIIGK NDVNSKQICH ITGAKLSIRE HDSDPNLRNI  180
ELEGSFDQIK QASAMVHDLI LNVSSVSGPP GKNITSQTSA PANNFKTKLC ENFTKGSCTF  240
GERCHFAHGT DELRKPGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g116940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630946.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R02e-94C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLG7ICA70.0G7ICA7_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAES631100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-54C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]