PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g005450.1
Common NameMTR_2g005450
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 828aa    MW: 98038.3 Da    PI: 7.0192
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g005450.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.83e-06193212625
                      -SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                      C+f+++t  C++GdrC++ H
  Medtr2g005450.1 193 CPFHLKTAACRFGDRCSRVH 212
                      ******************99 PP
2zf-CCCH28.13.4e-09322349126
                      --S---SGGGGTS..--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                      +k ++C  ++++G  tC++G  C+F+H+
  Medtr2g005450.1 322 WKVAICGEYMKSGykTCSHGTACNFIHC 349
                      899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.216187215IPR000571Zinc finger, CCCH-type
SMARTSM003567.1188214IPR000571Zinc finger, CCCH-type
PRINTSPR018482.6E-36193212IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.6E-36212232IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3301.1E-25218317IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.343219319IPR000504RNA recognition motif domain
CDDcd125401.11E-47220318No hitNo description
PRINTSPR018482.6E-36248263IPR009145U2 auxiliary factor small subunit
SMARTSM003614.4E-4249315IPR003954RNA recognition motif domain, eukaryote
SuperFamilySSF549285.49E-15251319IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.6E-36276298IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.6E-36303327IPR009145U2 auxiliary factor small subunit
SMARTSM003560.0025321350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.502321351IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6322349IPR000571Zinc finger, CCCH-type
PRINTSPR018482.6E-36341353IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MWSNRKEKRK ALKKLKRKER RKEIAEKERL EEEARLNDPE EERKRILLEQ QEAERIERDR  60
IAFEEREKAW IIKQQQQRDL EEEQQQLSQR DLEQHESELE EEEEEDVDDD DDGRPEIIWL  120
GNEIIIQKKN PNPLLLLHNH NHHHHHHHHQ EQHEHHDNRP TSNPFPPESP SQPLHNVAQQ  180
PPNFGTELDK AHCPFHLKTA ACRFGDRCSR VHFYPDKSCT LLIKNMYNGP GLAWEQDEGL  240
EYTDEEVERC FEEFYEDVHT EFLKFGEIVN FKVCKNGSFH LRGNVYVQYK LLDSALLAYN  300
SVNGRYFAGK QVSCKFVNLT RWKVAICGEY MKSGYKTCSH GTACNFIHCF RNPGGDYEWA  360
DSDKPPPKFW VKEMVALFGH SDNCEMSRVH GNFSALKHSS NILETDSDRY HSRRSRSREM  420
GQLYGGRSSR RRQEDERKQR TLDEEWNTNY KDNHKRKYRN KTSDSDSDKE GLEEVDRKKY  480
HEHTRKSSFN WNKDDNSRRH EEYSDVDRVT INRDNEKPHD RKGRNSQKSN RDSRDWIYEA  540
GCDEDRDGDG RKHHISRRKG SRHQSRDNSN VTDESESDKD RGHEEYSDVD WDTMSRENEK  600
QHGSNGRNSQ KWNRDSRYRI YEAGSDEDRH RKRHHSSQRK GSRHRSRDNS NVADESESDK  660
DRGHEKYSDV DWDTMSRDNE KQHDSKGKNS QKRNGDSKYQ IDEAGSDEDR HRKKHLSSQM  720
KESRHQSSDS GYGIDESDKD KGEMEAQHGY SRKNYENEND KVDGGWSHRD NDRRAHHHKK  780
KRLKYQKKLD STNGDSKNVS HKNSGELSSK NPSEDRHEQG KGSDSHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-281843489167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11220KKLKRKERR
2772788RRAHHHKKKRLKYQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g005450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1405490.0AC140549.12 Medicago truncatula clone mth2-28o14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631915.10.0zinc finger CCCH domain-containing protein 5 isoform X1
TrEMBLG7IN580.0G7IN58_MEDTR; Zinc finger CCCH domain protein, putative
STRINGAES631440.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-134C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]